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Sequence alignment
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Process in bioinformatics that identifies equivalent sites within molecular sequences
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Structural alignment
Aligning molecular sequences using sequence and structural information
Multiple sequence alignment
Alignment of more than two molecular sequences
Subject of 12
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
scientific article (publication date: June 2004)
PatMaN: rapid alignment of short sequences to large databases
scientific article
Cactus: Algorithms for genome multiple sequence alignment
scientific article published on 10 June 2011
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
scientific article (publication date: February 2010)
MultiPipMaker: A Comparative Alignment Server for Multiple DNA Sequences
scientific article published on 01 June 2010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
scientific article (publication date: April 2013)
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
scientific article
Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin
scientific article published on 21 May 2020
PipMaker: a World Wide Web server for genomic sequence alignments
scientific article published in February 2003
Fast and accurate large multiple sequence alignments using root-to-leave regressive computation:
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Wikipedia

In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Aligned sequences of nucleotide or amino acid residues are typically represented as rows within a matrix....

References
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