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A multicenter study benchmarks software tools for label-free proteome quantification
Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development
Chapter 9. Informatics Solutions for Selected Reaction Monitoring
Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides
A cross-platform toolkit for mass spectrometry and proteomics
Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments